PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623983.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 108aa    MW: 11673.4 Da    PI: 8.3851
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623983.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.54.4e-3815105190
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C aCk+lrrkC +dC++apyf +eq +++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar++dPvyG+v++i++lqqq+++l
  XP_013623983.1  15 PCGACKFLRRKCLSDCIFAPYFSSEQgAERFAAIHKVFGASNVSKLLLKVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFSLQQQVDKL 105
                     7***********************9989************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.92214108IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-3715106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MATSGNITTA GTGSPCGACK FLRRKCLSDC IFAPYFSSEQ GAERFAAIHK VFGASNVSKL  60
LLKVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFSLQQ QVDKLSGH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411040.0AC241104.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH017L09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623983.13e-76PREDICTED: LOB domain-containing protein 16-like
SwissprotQ9SLB76e-68LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A0D3B6C53e-76A0A0D3B6C5_BRAOL; Uncharacterized protein
STRINGBra000257.1-P2e-70(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.14e-69lateral organ boundaries-domain 16